Explore projects

Local sharpening of cryo-EM density maps

Scripts associated with the paper "Disentangling the impact of genetic and environmental factors on the proteotypes across individuals"

SNV calling software

Materials for the ALMF/Bio-IT Image Analysis with Python series, running Spring/Summer 2018

This Fiji script allows the user to load all files matching a certain naming pattern into an image stack.

Summary of my mechanical keyboard and black mouse.

Source code for "Genome-wide quantification of differential transcription factor activity: diffTF"

Tools for online image analysis of images acquired with Zeiss confocal microscopes.

Materials for the ALMF/Bio-IT Image Analysis with Python series, running Spring/Summer 2018

Materials for the Bio-IT "Image Processing with Python" course. Materials have been adapted from those originally forked from Karin Sasaki's GitHub repo.

Code to design smFISH probes

Bio-IT Linux Commandline courses

SNV calling software

Introduction to Python course materials