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Command line tool to download raw reads from ENA

A metagenomic SNV calling pipeline

Synchronises the content of a directory on the server with a galaxy library's folder. The server dir sub-structure is preserved and all files linked using symbolic links. The script can be started in daemon mode or placed under cron monitoring.

Materials for Python Scripting section of Nov 2015 Software Carpentry Course.

Snakemake biological workflow management tutorial

Workflow for htseq-clip usage of YBX3 eCLIP.

Dynamic genome browsing

Bio-IT Linux Commandline courses

Materials for a Bio-IT Workshop on Regular Expressions

EMBL Python User Group

Example client for the SASBDB REST API

Example client for the SASBDB REST API

A metagenomic SNP calling pipeline

ZEN Black Visual Basic code and ImageJ Jython scripts to enable the user to manually select the point where the next image is taken.