Explore projects

Server to implement image analysis jobs for online use (e.g. in feedback microscopy), including adapters to ilastik and TensorFlow.

Cython bindings and Python interface to SWORD (Smith Waterman On Reduced Database), a method for fast database search.

A PyTorch implementation of Tree-structured Conditional Random Fields.

GUI and functions for controlling the tracebot and automating microscopes.

Source code related to the publication "Visualization of loop extrusion by DNA nanoscale tracing in single human cells" by Beckwith, Ødegård-Fougner et.al. DOI: https://doi.org/10.1101/2021.04.12.439407