Explore projects

R package to read, register and compare point sets from single molecule localization microscopy.

Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.

XDS plugin for fast reading of cbf.gz files.

Material for an intermediate-level course on Git & various features of EMBL's GitLab.

A script to count the number of sequences in a FASTA file.

Archive of EMBL Hamburg Research Highlights

PDZnet meeting: EMBL PhD Course – Bioinformatics September 26-29, 2017

A four days practical course in bioinformatics softwares and approaches with a particular focus on protein-protein interactions. Mandatory for PDZnet fellows.

Microscopy Pipeline Constructor (MyPiC)

Course materials for image analysis with the scientific Python stack (numpy/scipy/scikit-image/matplotlib)

Nextflow workflow to convert pyramidal images in PerkinElmer qptiff format to ome-tiff.

Originated from https://github.com/rackt/redux/tree/master/examples/real-world adjusted to work with embase-ng-dev

Recognize different cell types based on morphology features

Tools for online image analysis of images acquired with Zeiss confocal microscopes.