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SVLT = Serving Vision to Living Things. A service for on-demand computer vision, targeted at image feedback in microscopy and other life sciences applications.

A scalable and reproducible Snakemake workflow for preprocessing SUM-seq data

Materials for the Software Carpentry workshop taking place at EMBL, Heidelberg, in September 2016

Materials for Python Scripting section of Nov 2015 Software Carpentry Course.

Snakemake biological workflow management tutorial

Snakemake biological workflow management tutorial

Snakemake biological workflow management tutorial

Snakemake biological workflow management tutorial

This is an example how snakemake can detected failed slurm jobs.

A simple workflow for scRNAseq analysis

helping scripts

Scripts associated with the paper, "Local transcriptional context influences isoform expression in abruptly reorganized yeast genomes"

This repository includes the exact commands/instructions in order to set up and run the integrative modelling of ScNPC adapted from Allegretti et al. (2020).