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Materials for a Bio-IT Workshop on Regular Expressions

Materials from the Bio-IT beer session on literate programming tools

EMBL Python User Group

Fork of the RCSB mmCIF-dict-suite, with CMake support added

The initial commit is taken from the v2.250 release, available at:

https://sw-tools.rcsb.org/apps/MMCIF-DICT-SUITE/source.html

Fork of the RCSB mmCIF-dict-suite, with CMake support added

The initial commit is taken from the v2.250 release, available at:

https://sw-tools.rcsb.org/apps/MMCIF-DICT-SUITE/source.html

A collection of droplet macros for Fiji

Example client for the SASBDB REST API

Example client for the SASBDB REST API

A metagenomic SNP calling pipeline

Empty repository; current version can be found at https://git.embl.de/grp-bio-it/linuxcommandline

Huber group getting started guide

ZEN Black Visual Basic code and ImageJ Jython scripts to enable the user to manually select the point where the next image is taken.

Inception-BN neural network model trained over protein crystal images

Model gives about 96% accuracy of classification image into three classes:

crystal

precipitate

no crystal

Material for an R/Bioc practical in the EMBO High throughput microscopy course 2016

Cytoscape introduction for the Microbial Communities 2016 course