Home.md

-Welcome to a Wiki page of FCS pipeline!
-1.  [Installation](Installation).
-2.  Prepare the following [structure of directories](structure of directories) with the data from FCS experiment.
-3.  ![fcs_pipeline workflow](uploads/2c5fb65b19810368bcee452f8d6ea874/workflow.png)
+### Welcome to a Wiki page of FCS pipeline!
+#### 1.  [Installation](Installation)
+#### 2.  Prepare the following [structure of directories](structure of directories) which contains:
+*   Output data from FCS experiments: .czi, .fcs, .row files produced by [ZEN software](https://www.zeiss.com/microscopy/int/products/microscope-software/zen.html)
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+*   Output files from [Fluctuation Analyzer (FA) software](http://fluctuations.de/downloads.html) provided by Malte Wachsmuth
+#### 3.  Structure of workflow:
+-  two user inputs:
+   -  main user input
+   -  plot parameters input
+-  loading metanodes:
+   -  collecting fluctuation data (FA WT, FA FP, FA dye metanodes)
+   -  collecting intensities (intensity data metanode)
+-  data processing nodes (joiner, python scripts)
+-  visualisation node (Python View)
+![fcs_pipeline workflow](uploads/2c5fb65b19810368bcee452f8d6ea874/workflow.png)
+#### 4. Prosedure: 
+1.  Fill main user input:
+
+