Home.md

@@ -10,17 +10,31 @@ Here we explain how to install and use Fluorescence Correlation Spectroscopy (FC
 1. Install [Anaconda](https://www.anaconda.com/distribution/) with Python3.
 2. Download the latest [KNIME Analytics Platform](https://www.knime.com/downloads). It is available for Windows, Linux, and Mac OS X.
 > Take a look on [Getting Started](https://www.knime.com/knime) for a brief introduction into KNIME Analytics Platform.
-3. Install the [KNIME Python Integration](https://docs.knime.com/2018-12/python_installation_guide/index.html) to be used with KNIME Analytics Platform.
+3.  Install KNIME Image Processing extension (File -> Install KNIME Extensions).  
+4.  Install the KNIME Python Integration extension (File -> Install KNIME Extensions).
 
-Follow this steps:
+Follow these steps as described in [KNIME Python Integration Installation Guide](https://docs.knime.com/2018-12/python_installation_guide/index.html):
 *  Download a configuration file [fcspy.yml](https://git.embl.de/halavaty/fcs-pipelines-vitali-vistunou)
-*  Type in your terminal (for windows command prompt or anaconda prompt)
+*  Type in your terminal (for Windows use command prompt or anaconda prompt)
 ```
 conda env create -f <PATH-TO-FOLDER-WITH-fcspy.yml>/fcspy.yml
 ```
-conda env create -f <PATH-TO-FOLDER>/py36_knime.yml
-3.  Save and unzip [fcs_pipeline.zip](https://git.embl.de/halavaty/fcs-pipelines-vitali-vistunou) in knime-workspace directory that was created after KNIME installation. fcs_pipeline directory includes all files needed for fcs pipeline to work. 
-4.  Install [Fluctuation Analyzer (FA) software](http://fluctuations.de/downloads.html) provided by Malte Wachsmuth.
+*  For Windows user: create py36.bat that contains path to your Anaconda folder (**must contain Scripts folder**):
+```
+@REM Adapt the folder in the PATH to your system
+SET PATH=<PATH_TO_ANACONDA_FOLDER>\Scripts;%PATH%
+CALL activate py36_knime || ECHO Activating python environment failed
+@python %*
+``` 
+*  For Linux users: create py36.sh that contains path to your Anaconda folder (**must contain bin folder**):
+``` 
+``` 
+Examples of files are [here](https://git.embl.de/halavaty/fcs-pipelines-vitali-vistunou)( (py36.bat and py35.sh)
+
+5.  Save [fcs_pipeline.zip](https://git.embl.de/halavaty/fcs-pipelines-vitali-vistunou) on your computer and unzip it in knime-workspace directory. 
+> fcs_pipeline directory includes all files needed for the pipeline to work. 
+
+6.  Install [Fluctuation Analyzer (FA) software](http://fluctuations.de/downloads.html) provided by Malte Wachsmuth. In case LabVIEW error, please install [.NET Framework 3.5](https://www.microsoft.com/ru-ru/download/details.aspx?id=21)
 #### Structure of workflow
 -  two user inputs:
    -  main user input