Home.md

 ### Welcome to a Wiki page of FCS pipeline!
 #### 1.  [Installation](Installation)
-#### 2.  Prepare the following [structure of directories](structure of directories) which contains:
-*   Output data from FCS experiments: .czi, .fcs, .row files produced by [ZEN software](https://www.zeiss.com/microscopy/int/products/microscope-software/zen.html)
-*   Output files from [Fluctuation Analyzer (FA) software](http://fluctuations.de/downloads.html) provided by Malte Wachsmuth
-#### 3.  Structure of workflow:
+#### 2.  Structure of workflow:
 -  two user inputs:
    -  main user input
    -  plot parameters input
@@ -13,7 +10,11 @@
 -  data processing nodes (joiner, python scripts)
 -  visualisation node (Python View)
 ![fcs_pipeline workflow](uploads/2c5fb65b19810368bcee452f8d6ea874/workflow.png)
-#### 4. Prosedure: 
-1.  Fill main user input:
+#### 3. Prosedure: 
+1.  Prepare the following [structure of files](structure of directories) which contains:
+*   Output data from FCS experiments: .czi, .fcs, .row files produced by [ZEN software](https://www.zeiss.com/microscopy/int/products/microscope-software/zen.html)
+*   Output files from [Fluctuation Analyzer (FA) software](http://fluctuations.de/downloads.html) provided by Malte Wachsmuth
+2.  Fill main user input:
+3.  Fill plot parameters input