Home.md

 ### Welcome to a Wiki page of FCS pipeline!
 Here we explain how to install and use Fluorescence Correlation Spectroscopy (FCS) pipeline. The FCS pipeline is an FCS-based calibrated image analysis software for the interactive and automated processing of FCS  data. 
 
-#### 1.  [Installation](#installation)
+#### 1.  [Installation](installation)
 #### 2.  [Structure of workflow](#structure-of-workflow)
 #### 3.  [Procedure](#procedure)
 #### 4.  [Interactive Visualisation](#interactive-visualisation-of-calibration-plot)
@@ -47,7 +47,7 @@ CALL activate py36_knime || ECHO Activating python environment failed
 
 #### Procedure 
 1.  This step can be omitted. Process a WT data with Fluctuation Analyzer (FA) to obtain WT.res (only loading data and saving data steps are needed). In FCSPipeline KNIME workflow, fill a WT user input and execute Python Source node. Use returned offset value for correction steps in further FA sessions for FP and POI. 
-2.  Perform FA analysis including all intermediate FA steps (correlations calculation, correction, fitting of correlations with ACF) to obtain mFP.res and POI.res.  **Important:** do not forget to save fluctuation traces with ACF fitting curves (Export all traces button) as **.cof, .itr files**
+2.  Perform FA analysis including all intermediate FA steps (correlations calculation, correction, fitting of correlations with ACF) to obtain mFP.res and POI.res.  **Important:** do not forget to save fluctuation traces with ACF fitting curves (Export all traces button) as .cof, .itr files
 3.  Prepare the following [structure of files](structure of files).
 4.  Specify parameters in a main user input
 > You can change any parameters or leave default values. The explanation of every parameter can be founded in a description menu of KNIME node.