STAR Index Download Time
When trying to download the STAR index automatically instead of specifying the path, the pipeline seems to default to an execution time of 5mins for this job. The download of the file takes longer so maybe necessary to increase the time limit for this job. Here is my error message from the slurm logs: [rest of log] 4570700K .......... .......... .......... .......... .......... 15% 4.47M 22m52s 4570750K .......... .......... .......... .......... .......... 15% 5.01M 22m52s slurmstepd: error: *** JOB 13066574 ON sm-epyc-01 CANCELLED AT 2024-10-05T12:32:03 DUE TO TIME LIMIT *** 4570800K .......... .......... .......... .......... .........slurmstepd: error: *** STEP 13066574.0 ON sm-epyc-01 CANCELLED AT 2024-10-05T12:32:03 DUE TO TIME LIMIT *** Will exit after finishing currently running jobs (scheduler). . 15% 3.47M 22m52s 4570850K .......... .......... ...Will exit after finishing currently running jobs (scheduler). srun: Job step aborted: Waiting up to 242 seconds for job step to finish. ....... .......... .......... 15% 4.36M 22m52s