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Updates to plotting functions:

Alvaro Andrades Delgadorequested to merge
adelgado/strandtools:main into main

plot_cn_overview():

  • Now accepts various data types (categorical, integer, float, boolean, character). Non-numerical data types are converted to categorical.
  • Legend is categorical for non-numerical data types, as well as for copy number predictions.
  • Removed whitespace on the left when no dendrogram is plotted.
  • Repositioned legend to be closer to the plot and to have a larger font.
  • Adds whitespace between chromosomes.
  • Optionally adds whitespace between cells.

get_cn_palette(): adapted to be compatible with categorical data in the modified plot_cn_overview().

Added plot_count_ratio_sel(), which makes a counts-ratio plot where a given chromosome from a given cell is highlighted on top of the background of all chromosomes and all cells.

Authors: Marco Raffaele Cosenza, Alvaro Andrades, Eva Benito

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