Explore projects

Extension of AutoMicTools project for testing and running for feedback microscopy experiments with FluoView 3000 confocal microscope

Franziska Walterspiel - Deo Group, EMBL Heidelberg;

Christian Tischer, Arif Khan - Bioimage Analysis Service Team, EMBL Heidelberg;

Repository to save all code generated and employed in the Mitotic Exit project

Notes and SLURM templates for using AlphaFold and related tools on the EMBL HD cluser

Collection of repositories used in kefir course

Rendered at https://grp-bio-it.embl-community.io/template-quarto

Cyntha van den Berg - Utrecht University; Anna Akhmanova - Utrecht University; Sebastian Schnorrenberg - ICLM; Ziqiang Huang - ICLM; Line Filter, Intensity Profile Plot, Fiji

Extends the Rarr package to deal with images in ome-zarr format.

Krim Anlas - Trivedi lab;

Nicola Gritti - MIF

Keywords: bioimage analysis, support, MIF, python, matlab, TGMM, gastruloids, TGMM, tracking

Nick Marschlich - Trivedi lab;

Nicola Gritti - MIF

Keywords: bioimage analysis, support, MIF, python, pescoids, ultrack, ome-zarr, napari, tracking