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bioimage analysis

Centre for Bioimage Analysis

Nobuko Tsuchida-Straeten - Matias Simons Lab, University Hospital Heidelberg

Christian Tischer - Bioimage Analysis Support Team, EMBL

Aliaksandr Halavatyi - Advanced Light Microscopy Facility, EMBL

a MATLAB application (GUI) to support MINFLUX data visualization

Joana Silva - Haase - Trivedi labs

Nicola Gritti - MIF

Keywords: Thunder, python, segmentation, support, bioimage analysis, micropatterns

Simona Gioe, Jona Rada, Hidenobou Miyazawa, Sapna Chhabra - Aulehla Group; Christian Tischer, Arif Khan - Centre for Bioimage Analysis

A Fiji Groovy script to perform cardiac muscle movement analysis.

Laura Bianchi - Ruprecht lab (CRG)

Gopi Shah - MIF

Nicola Gritti - MIF

Keywords: Luxendo, MuVi SPIM, python, cellpose, apoptosis, segmentation, tracking, support, external, bioimage analysis, zebrafish

Daniel Heid - Zaugg Group;

Christian Tischer - CBA;

Wound healing analysis, High throughput microscopy

Mahak Bhushan, Francesca Coraggio - Rapti Lab, EMBL Heidelberg; Christian Tischer - Centre for Bioimage Analysis, EMBL Heidelberg; ImageJ Macro, Glia volume measurement

Cuylen Lab

Kenta Imai, Maho Hamasaki - ALMF visitor;

HTM, Screen, Autophagy, CellProfiler

Alina Ritz- Heard Group;

Christian Tischer, Arif Khan - CBA;

Nextflow, python, nuclear cytoplasmic intensity measurements, MoBIE;

Cyntha van den Berg - Utrecht University; Anna Akhmanova - Utrecht University; Sebastian Schnorrenberg - ICLM; Ziqiang Huang - ICLM; Line Filter, Intensity Profile Plot, Fiji

Krim Anlas - Trivedi lab;

Nicola Gritti - MIF

Keywords: bioimage analysis, support, MIF, python, matlab, TGMM, gastruloids, TGMM, tracking

Nick Marschlich - Trivedi lab;

Nicola Gritti - MIF

Keywords: bioimage analysis, support, MIF, python, pescoids, ultrack, ome-zarr, napari, tracking

Kerim Anlas - Trivedi lab;

Kristina Stapornwongkul - Trivedi lab;

Nicola Gritti - MIF

Keywords: bioimage analysis, python, HCR, gastruloids, Opera PE, MIF, support, nextflow

Sergi Lopez Serrano - Meyerhans lab (UPF);

Montserrat Coll Llado - MIF;

Nicola Gritti - MIF

Keywords: bioimage analysis, support, Luxendo, MuVi SPIM, MIF, external